Little update...took mine in to finally get this popping thing dealt with. The only annoying thing is they are charging me 60 bucks for a computer update...still under warranty. But I am so over it I would pay 200...sadly.
Also...my water pump failed which is why its at the dealer in the first place...total fail for Ford on the build quality.
I'd push back on them. My dealer fixed it under warranty. I understand charging for feature updates, but not ones that fix actual problems (especially ones with a bulletin: SSM 47835).