If you're a smoker or vaper, take the PCV hose off and blow into it..and look for smoke around the intake. it worked for me, when I had to replace my broken intake, it ran like absolute shit after.. come to find out, on those Dorman intakes, the PCV elbow snaps into the intake, and they do NOT include an o ring for it..which it needs, or you will have a vacuum leak and issues. So if that intake is not original, check that. even if it is original, check it anyway, PCV leak isn't uncommon.
Also, I didn't see new coils on that list, only plugs. That may be something to look into.
And, are you sure the fuel filter isn't backwards? Did you plug everything back in? If you left the MAF unplugged, it would also do this. Go back and double check all connections, just to rule that out.
Are there any codes coming up, CEL light on?