They rebuilt mine at ~54k. When I took it back in at 59k, they just put a new transmission in it. As long as the problem is repeatable, it shouldn't be an issue. They might try to "reprogram the TCM" sometimes called "reloading shift strategy," "clearing transmission learning tables," etc. before they'll rebuild/replace it again. I would make sure even if they do that and it seems better, listen for what sounds like the old power-steering-pump-low-fluid whine. If shifts aren't buttery smooth, keep a mental (or physical) note of which gearshifts seem to be the worst. Usually it will be 1-3, 3-5 and sometimes 3-4 in my experience. Then go back again and give them a laundry list of complaints, clearly written down, and in great detail. Assume the techs don't know you, don't have the same hearing or sense of touch that you do, and need to be explained to in small words -- not because the techs are stupid, but because people make assumptions about what someone knows or doesn't know. "You know, THE THING!" Like, "my car makes a funny noise" is not the same thing as "my car is making a noise that sounds like pump whine, especially under moderate acceleration through gears 1-5." Pretend this is an exam, and if you fail to communicate clearly and completely, it's going to cost you $5k-10k.