Update to this if anyone cares.
Took the Expedition in (39k miles), yet again, for harsh shifting, but this time also at higher gears. There also seemed to be a small leak coming from the back, which I assumed to be from the differential. Two months later, and two loaners later, finally got the Expedition back. They rebuilt the transmission with a new CDF cylinder in accordance to the TSB, and also found the pinion seal & diff cover to be the culprit for the leak. Here are the service reports, incase anyone is curious.
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