OLD INFORMATION !
First, starting with 2016MY Ford DOES cover paint bubbling on aluminum body panels.
Second, when Ford started building the aluminum body F150 a few years ago, they completely changed the whole aluminum body panel process. The aluminum alloy is different (from the old one), the "pickling" (chemical applied after the aluminum is rolled out) is different, the primer is different. Most importantly, the process of stamping and finishing the panels is different (segregated from any similar operations done on steel panels).